PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI43656.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10583.9 Da    PI: 5.7185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI43656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.21.6e-211157349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                ++++  rqvtfskRr+g++KKA+ELS+L +ae+a+++fs+ +k y +
  MCI43656.1 11 VKDSNTRQVTFSKRRTGLFKKANELSILSGAEIAIVVFSPGNKPYSF 57
                689999**********************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    
MGRRKIEIEM VKDSNTRQVT FSKRRTGLFK KANELSILSG AEIAIVVFSP GNKPYSFGHP  60
GVHVVAVKYL QQDPESSDSE GDPSSDASNM DELNLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-32M-type_MADS family protein