PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI30325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18345 Da PI: 8.4993 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77 | 1.4e-24 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i++++n qv+fskRr g++KKA+EL++LC+aeva+i+fs+ gk++ + MCI30325.1 16 KKISDETNLQVSFSKRRSGLFKKASELCTLCGAEVALIVFSPGGKVFSF 64 68********************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence |
MSSGRKTRGR QKVEMKKISD ETNLQVSFSK RRSGLFKKAS ELCTLCGAEV ALIVFSPGGK 60 VFSFGHPNVD AVIDRYXXXX XXXXDGVMRF IEAYRSANVC QLNTQLTHIN NMLDNEKRRH 120 DELNHIRKMT EDHCWWACPI DGMNWDQLDL FKNALEDLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-53 | M-type_MADS family protein |