PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MCI28657.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 168aa MW: 18653.8 Da PI: 6.5105 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 130.9 | 1.4e-40 | 43 | 168 | 2 | 130 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+++Ae +++g+ ela+ +Larl+++ sp g+p+qR+a+yf+eAL + l++ ++ + + + s++ ++ a+k fse+sP+l+f+++t Nq MCI28657.1 43 IDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQS---NVNNGNNNXNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQ 138 789**************************************************9...555555566666666*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlq 130 a+leaveg +r+HiiDfdi+ G+QW +++q MCI28657.1 139 ALLEAVEGYDRIHIIDFDIGFGGQWSSFMQ 168 *****************************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence |
QQQLQLLPHH LQQRSMAPKQ KMGNPGSGDG EDVSTHQFQQ AIIDQLFKAA ELIDAGNPEL 60 AHGILARLNH QISPIGKPFQ RAAFYFKEAL LQLLQSNVNN GNNNXNFSPT GLLLKIGAYK 120 SFSEISPVLQ FANFTSNQAL LEAVEGYDRI HIIDFDIGFG GQWSSFMQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-36 | GRAS family protein |