PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI25522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 92aa MW: 10748.5 Da PI: 9.0934 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 50.4 | 3.7e-16 | 9 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg MCI25522.1 9 FKTELCNKWQETGTCPYGDHCQFAHG 34 79***********************8 PP | |||||||
2 | zf-CCCH | 20.7 | 7.1e-07 | 47 | 71 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H MCI25522.1 47 YKTEVCRMVLA-GvMCPYGHRCHFRH 71 9**********.66**********88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence |
MVVYNQGMFK TELCNKWQET GTCPYGDHCQ FAHGIGELRP VIRHPRYKTE VCRMVLAGVM 60 CPYGHRCHFR HALTEQEKAL SQPKPRSMKL ER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-52 | C3H family protein |