PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI25070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 140aa MW: 15670.6 Da PI: 6.4976 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.9 | 4e-44 | 9 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++red+++sl+yeAear++dPvyG+vg+i+ lq+ql l++el+++++ MCI25070.1 9 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKVFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQRQLLGLQKELDATNA 107 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence |
MTSSYSNSPC AACKFLRRKC NQDCIFAPYF PPEEPHKFAN VHKVFGASNV SKILNEVLPH 60 QREDTVNSLA YEAEARIKDP VYGCVGFISG LQRQLLGLQK ELDATNADLI QFTIQGSSSL 120 GLGHVDHSHD FYNYPSNFEQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-66 | LBD family protein |