PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI23882.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 88aa MW: 10155.7 Da PI: 6.7285 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.2e-05 | 2 | 25 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k +s s+Lk+H+r + MCI23882.1 2 YSCNRCNkKKYSVLSDLKSHMRQC 25 99********************87 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00083 | 29 | 49 | 3 | 20 |
ET...TTTEEESSHHHHHHHH CS zf-C2H2 3 Cp...dCgksFsrksnLkrHi 20 C+ Cg++Fsrk+ L H MCI23882.1 29 CKwkcCCGTTFSRKDKLFGHV 49 777778***********9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence |
MYSCNRCNKK KYSVLSDLKS HMRQCGDECK WKCCCGTTFS RKDKLFGHVA LFEGHMPAVV 60 LEECEEKGKQ VMVEEIEDSI VEKEKSDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 4e-26 | C2H2 family protein |