PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI20902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 113aa MW: 11714.3 Da PI: 8.8573 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.9 | 6.2e-37 | 24 | 112 | 1 | 88 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasnv+kll +p ++r da+ sl+yeA+ar+rdP+yG+vg+i++lqqq+ MCI20902.1 24 PCGACKFLRRKCVPGCIFAPYFDSEHgTSHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFALQQQVT 112 7*********************999879***********************************************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence |
MSLNSSGSGG SGGGSGSGGN SGSPCGACKF LRRKCVPGCI FAPYFDSEHG TSHFAAVHKV 60 FGASNVSKLL LGIPINRRLD AAVSLCYEAQ ARLRDPIYGC VGHIFALQQQ VTH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 6e-51 | LBD family protein |