PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI19577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | ARF | ||||||||
Protein Properties | Length: 114aa MW: 12590.5 Da PI: 10.666 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.4 | 1.9e-11 | 5 | 47 | 55 | 99 |
ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++r++lt+GW+ Fv+ ++L +gD v+F + +++el+++v+r+ MCI19577.1 5 QPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGEDGELRLGVRRA 47 6899*************************..449999*****996 PP | |||||||
2 | Auxin_resp | 42.8 | 2.3e-15 | 73 | 114 | 2 | 43 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGm 43 ++a+st+++F++ YnPr ++seF+++++k++k+l+ ++svGm MCI19577.1 73 VNALSTRCAFNIHYNPRIGSSEFIIPMHKFLKSLDYSYSVGM 114 789**************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence |
MNAGQPRRHL LTTGWSAFVN KKKLVSGDAV LFLRGEDGEL RLGVRRAAQL KSSSNFSSIS 60 GQQLNLGSLT DIVNALSTRC AFNIHYNPRI GSSEFIIPMH KFLKSLDYSY SVGM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 3e-42 | ARF family protein |