PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI17503.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 110aa    MW: 12021.4 Da    PI: 9.6571
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI17503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-08422725
                SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  7 rffartGtCkyGdrCkFaH 25
                ++++r+G Ck+G  CkF+H
  MCI17503.1  4 QYYQRSGGCKFGKACKFNH 22
                59***************** PP
2zf-CCCH443.7e-144367226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++++C++++rtG Ck+G++C+F+H+
  MCI17503.1 43 GERECPYYMRTGSCKFGSNCRFNHP 67
                5799********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    
MLWQYYQRSG GCKFGKACKF NHTRGFTAPI SELNFLGLPI RLGERECPYY MRTGSCKFGS  60
NCRFNHPDPT TVGGGDPQSG FGNGGSAALR SVSQQSSASW SSSRKLNETP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.18e-33C3H family protein