PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI17503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 110aa MW: 12021.4 Da PI: 9.6571 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.2 | 5.8e-08 | 4 | 22 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++r+G Ck+G CkF+H MCI17503.1 4 QYYQRSGGCKFGKACKFNH 22 59***************** PP | |||||||
2 | zf-CCCH | 44 | 3.7e-14 | 43 | 67 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++C+F+H+ MCI17503.1 43 GERECPYYMRTGSCKFGSNCRFNHP 67 5799********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MLWQYYQRSG GCKFGKACKF NHTRGFTAPI SELNFLGLPI RLGERECPYY MRTGSCKFGS 60 NCRFNHPDPT TVGGGDPQSG FGNGGSAALR SVSQQSSASW SSSRKLNETP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 8e-33 | C3H family protein |