PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI14781.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 106aa MW: 11863.2 Da PI: 6.758 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.3 | 2.5e-13 | 59 | 84 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ MCI14781.1 59 DQPECQFYMKTGDCKFGAVCRFHHPR 84 789*********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence |
MGSDSPQQTM RNDQTYGTSH QGEPENTGLQ GAYSQYRSGS VPVGFYALQR ENIFPERPDQ 60 PECQFYMKTG DCKFGAVCRF HHPRERTVPA PDCILSPIGL PLRPVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 2e-36 | C3H family protein |