PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI14774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 103aa MW: 11078.5 Da PI: 8.2136 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.7e-09 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +++G+Ck+G+rCk++H+ MCI14774.1 1 MKSGICKFGERCKYHHP 17 89**************8 PP | |||||||
2 | zf-CCCH | 40.2 | 5.5e-13 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + e+C+++++t tCk+G++CkF H+p MCI14774.1 44 GVEICPYYLKTATCKFGATCKFDHPP 69 689*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence |
MKSGICKFGE RCKYHHPIDR STASLSKLQS NVKLTAAGLP RREGVEICPY YLKTATCKFG 60 ATCKFDHPPP GEVMELAKSQ GTSTTNGGET ETNVDVSGSA PEQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-33 | C3H family protein |