PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI12224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 66aa MW: 7488.85 Da PI: 10.8977 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52 | 9.2e-17 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 +i+n+s r+ t+ kR+ gi+KK EL +LCd+ ++vii MCI12224.1 10 FISNDSARKATYKKRKRGIIKKVRELTILCDVPACVIIS 48 8************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 66 aa Download sequence |
MTRRKVKLAF ISNDSARKAT YKKRKRGIIK KVRELTILCD VPACVIISNP FNSETVAWPD 60 PEGAKQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKVKLAFISNDSARKATYKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-16 | M-type_MADS family protein |