PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI10238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 217aa MW: 25057.1 Da PI: 9.6343 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 32 | 54 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++Cr+fa G C++G+ C+F H MCI10238.1 32 TRPCRDFAV-GKCRRGSLCNFLHH 54 89*******.*************6 PP | |||||||
2 | zf-CCCH | 24.9 | 3.4e-08 | 94 | 115 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G++CkF+H+ MCI10238.1 94 EACINFAK-GSCRMGASCKFMHD 115 78******.*************6 PP | |||||||
3 | zf-CCCH | 22.6 | 1.9e-07 | 158 | 179 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C +fa+ G C+ G +CkF H+ MCI10238.1 158 EVCTNFAK-GRCRMGTSCKFVHD 179 78******.*************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
SRSRSQSRSP PRGFRRDSGV DDRKRMRVVG STRPCRDFAV GKCRRGSLCN FLHHDDNQNR 60 ENSWEGKHRE DRAPRYSATH ERGDHSLKXG RSNEACINFA KGSCRMGASC KFMHDNDSDG 120 YGKVSRDEFT REREDRAPRY PAAHEDGDHS LRRGRSNEVC TNFAKGRCRM GTSCKFVHDN 180 DSDGYGKVFT DEFTREREID RRHRDNSFEQ GGRHASM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-06 | C3H family protein |