PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI07243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 218aa MW: 23845.9 Da PI: 5.3839 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 92 | 116 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ MCI07243.1 92 FKTKLCCKFRV-GTCPYITNCNFAHS 116 69*********.*************8 PP | |||||||
2 | zf-CCCH | 19.5 | 1.7e-06 | 168 | 193 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ MCI07243.1 168 YKGRHCKKFYTEEGCPYGDSCTFLHD 193 78888********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MDYNRDGNVV QIITSGGGGG GADSWSTDQA DWATEDEYRY WNGNEPGETT PSSNSNSEIQ 60 QRSGSEPPSK KSRSNSQDGG SNRAKAIGKM FFKTKLCCKF RVGTCPYITN CNFAHSVEEL 120 RRPPANWQEI VAAHEEERNV LEQPREEFQI PTVGSSTFVG ESMNNRSYKG RHCKKFYTEE 180 GCPYGDSCTF LHDEQSKNRE SVAISLGPGG YGGGGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 2e-73 | C3H family protein |