PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI04781.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family RAV
Protein Properties Length: 302aa    MW: 33699.6 Da    PI: 9.6111
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI04781.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-1453101155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      ++r++lg+f t++eAa+a++ a+++++g
  MCI04781.1  53 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNTEDEAARAYDVAAQRFRG 101
                 89****9888.8*********3.....5**********99*************98 PP
2B398.25.1e-31183294196
                 EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kv tpsdv+k++rlv+pk++ae+h                    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++
  MCI04781.1 183 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqkavdcgaegsaAAAAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQR 281
                 99*************************8888888877666533344999*************************************************8 PP

                 -SS.SEE..EEEE CS
          B3  85 dgr.sefelvvkv 96 
                 + +  +++l++ +
  MCI04781.1 282 STTgPDKQLFIDW 294
                 8776777777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
TTESLSITIP PTKKPSTPPP PNSLCRVGSG TSTVVDSDGS GVGEAESRKL PSSKYKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFNTEDEAAR AYDVAAQRFR GKDAVTNFKP LSNDDNDDME  120
VEFLNSHSKS EIVDMLRKHT YNDELEQSKR SRGFINRRSH GDSNCSNFAS FQSSEKKARE  180
DLFEKVVTPS DVGKLNRLVI PKQHAEKHFP LQKAVDCGAE GSAAAAAGKG VLLNFEDVGG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVKEKN LKAGDTVCFQ RSTTGPDKQL FIDWKARKNV  300
NE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-125RAV family protein