PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCI03957.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 178aa    MW: 21011 Da    PI: 11.4266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCI03957.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.8e-071437226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ Cr + +   C++G+ C+F+H 
  MCI03957.1 14 REATCRQYEE-NVCNRGGYCNFMHL 37
                6789**9999.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
RPIIVDFSPV TDFREATCRQ YEENVCNRGG YCNFMHLKKI SRDLRKRLFG RSSRRWNDRS  60
GSRSRSPPRN RNYEGRSYSG RGSGRRDLDR SHGHHGRRPR SRSPRHRGKR SRSPAGRDRS  120
PNPVRERETS VERRARIEQW NREKEVDDSG IKDTKSNNDY EEPSLKNGNE YESGNHQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198107RPRSRSPRHR