PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCI01308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 257aa MW: 28755.5 Da PI: 6.8336 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.6e-09 | 28 | 49 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C +f+r G C++G++C+F+H MCI01308.1 28 VSPCVYFMR-GSCQRGNSCSFSH 49 579******.************* PP | |||||||
2 | zf-CCCH | 17.3 | 8.7e-06 | 54 | 78 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++ C+ff+ C+ G++C F+H+ MCI01308.1 54 KRPQCKFFFSLQGCRNGESCLFSHD 78 8999********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
TRAQFPDGSS GQAPEDADYG NFHVNRDVSP CVYFMRGSCQ RGNSCSFSHT FQAKRPQCKF 60 FFSLQGCRNG ESCLFSHDTD RSAASAHRNT CLPEDNAMNS ASLLNLFPKS RDGSILVLDD 120 TSLHFTSSLA CHYDPSKIIS TTSLSETTFT EPSLTGARIL WGLYHPYQTI IAKAGKTLIP 180 WNEVQCVLWF PCFDSYGEDL AGKKKVVQNF FEYLAIRFLA DDLQEVQVII TMNNIRFSQL 240 QVIACARDLL PFNGVIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-07 | C3H family protein |