PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH99432.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 246aa MW: 26961.1 Da PI: 5.1081 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 192 | 210 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C ffa+ G+C +G++C+F H MCH99432.1 192 CAFFAQ-GWCIRGSSCSFLH 210 999***.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MELDGKEKNL EPVSSVPENP EVIRPEHDME ENDAMLKASV PSHEELTLKK EEFPLKQEVL 60 SPPKPSENLI PAEDGKNQGL NVDVENSGHL QRKIFGGCSE PYCNSKASLS DVKSIDSRAT 120 KSSSDTGKDV VTGIIPRGNF VEDADGGQNS QEKIMQSEME PRVDVKQKQS RTRSLSPSAA 180 MKDGNKRPAI TCAFFAQGWC IRGSSCSFLH IKDSVNNTGQ GVEGDLVTAH QKRELKLEKG 240 VKENVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-10 | C3H family protein |