PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH88355.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

MYB

Protein Properties

Length: 456aa MW: 49709.5 Da PI: 4.638

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH88355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.2	1e-09	75	116	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ ++ +G++ +++Ia+ + ++t +c+++++k MCH88355.1 75 PWTSEEKEIFLEKFAAFGKD-FRKIASFLD-HKTTADCVEFYYK 116 8***************99.*****.*********98 PP
2	Myb_DNA-binding	38.8	2.2e-12	291	333	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++av +G++ +++Iar++g +R++++ck ++ k MCH88355.1 291 EWTDDEKTAFLQAVSSFGKD-FAKIARCVG-TRSREHCKVFFSKT 333 6***************99.*****.******988775 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MNAAGNHLSL VPTAEIINFT SKLLSESQPQ LQRNTLRMPA LILDEKEKMV TKFISSNGLV 60 EDPLAIEKER DMINPWTSEE KEIFLEKFAA FGKDFRKIAS FLDHKTTADC VEFYYKNHKS 120 ECFEKLKRKD VGKLGKSFSA KTNLMASGKK WNHEVDVSSL DILSAASLMA DGIAGNKRMR 180 SGRFLLGGYG NVKASRAEDS NIERSNSFDI LGDERETAAA ADVLAGICGS LSSEAMSSCI 240 TSSIDPVDGN KERKFLRGNP LCKQPLVRDI SQNADDETCS DESCGEVDVS EWTDDEKTAF 300 LQAVSSFGKD FAKIARCVGT RSREHCKVFF SKTRKVLGLD LSHPIPGIVE SPLNDDANGG 360 ESDTDDACVV EAGSVVDADK SGNKTDEDLP SDALNTFHDE SNPMEARSPS AELNESREIS 420 ETEVRLENLD VASNVCAIKV ESKLGSDGSG VDLGKT

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MNAAGNHLSL VPTAEIINFT SKLLSESQPQ LQRNTLRMPA LILDEKEKMV TKFISSNGLV  60
EDPLAIEKER DMINPWTSEE KEIFLEKFAA FGKDFRKIAS FLDHKTTADC VEFYYKNHKS  120
ECFEKLKRKD VGKLGKSFSA KTNLMASGKK WNHEVDVSSL DILSAASLMA DGIAGNKRMR  180
SGRFLLGGYG NVKASRAEDS NIERSNSFDI LGDERETAAA ADVLAGICGS LSSEAMSSCI  240
TSSIDPVDGN KERKFLRGNP LCKQPLVRDI SQNADDETCS DESCGEVDVS EWTDDEKTAF  300
LQAVSSFGKD FAKIARCVGT RSREHCKVFF SKTRKVLGLD LSHPIPGIVE SPLNDDANGG  360
ESDTDDACVV EAGSVVDADK SGNKTDEDLP SDALNTFHDE SNPMEARSPS AELNESREIS  420
ETEVRLENLD VASNVCAIKV ESKLGSDGSG VDLGKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-93	MYB family protein