PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MCH87080.1
Organism
Trifolium medium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 283aa    MW: 31796.6 Da    PI: 7.7262
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MCH87080.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07134154526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck Gd C +aHg
  MCH87080.1 134 ACPDFRK-GNCKKGDACEYAHG 154
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MMIGEHHRSN PTVHIPPWPN HDDPTSEMYS SYYPDDSNAG AGDYSPYYLR EAMAALQRYL  60
PSNEFDAVDG DSDSESPADS PVDAFTCDHF RMYEFKIRRC ARGRSHDWTE CPYAHPGEKA  120
RRRDPRKFHY SGTACPDFRK GNCKKGDACE YAHGVFECWL HPARYRTQPC KDGTSCRRRV  180
CFFAHTPEQI RLNVNSPPPR SLNSPDSYDG SPLRQMALPL PFMSSPVSTT PPESPSPPMS  240
PMAQSLSKSL GSSSINEMVA SLRNLQLGKL KSIPSMPANR NIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-102C3H family protein