PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH85377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 240aa MW: 26838.6 Da PI: 8.8097 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 2 | 21 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++++ G C yG+rC++ H+ MCH85377.1 2 CSYYQK-GSCAYGSRCRYKHV 21 ******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
VCSYYQKGSC AYGSRCRYKH VRASQASSSA SMVSDSAKVA SNWVPKVTKA PAPDKRGVRS 60 LQRKHQDSSD VGESSTASAR PHDIFCTFAA ANCPLGDGCS RVHGNQCLYC RKYCLHPTDK 120 KEKESHLRTC DKKEKYLLAL KNSEEIECNV CLERVLSKPK PSECKFGLLP ECDHAFCLSC 180 IRNWRNSAPT SGIEISSNSN TVRTCPVCRK LSYFVIPSGI WFTTKEEKQE IIDNYKANCR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 2e-68 | C3H family protein |