PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH84999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26485.3 Da PI: 7.3364 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 7.2e-12 | 31 | 56 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G+rCkF+H+ MCH84999.1 31 PGEPDCPFFLKTQKCKFGSRCKFNHP 56 5789*********************8 PP | |||||||
2 | zf-CCCH | 39.5 | 9.4e-13 | 73 | 98 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG CkyG+ CkF+H++ MCH84999.1 73 QEPPCAFYLKTGKCKYGAACKFHHPK 98 689*********************96 PP | |||||||
3 | zf-CCCH | 40.6 | 4.2e-13 | 152 | 175 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G++C+++H+ MCH84999.1 152 EVDCPFYMKTGSCKFGASCRYNHP 175 689********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MLPVFLVILM FPDQCLLVPN VVPSETLPER PGEPDCPFFL KTQKCKFGSR CKFNHPNVPS 60 ENPDVSGLPE RPQEPPCAFY LKTGKCKYGA ACKFHHPKDI QIQFSDESSR TVEQTQTNSS 120 MFDGAIGDAQ QTKPLISPLL HNSKGLPVRL GEVDCPFYMK TGSCKFGASC RYNHPDMNAI 180 NPPISALAPS LLGSSAANHN IGVINPAASF YQAFDPRISN PMTQVGVTGT IYPQRPGQIE 240 CD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 4e-71 | C3H family protein |