PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH84185.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 413aa MW: 46568.1 Da PI: 8.5452

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH84185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	33	55	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t++Cr+fa G C++G+ C+F H MCH84185.1 33 TKPCRDFAV-GNCRRGSHCHFLHH 55 89*****.***********6 PP
2	zf-CCCH	21.9	3e-07	158	178	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++fa G C yG C+F+H+ MCH84185.1 158 PCKYFAL-GNCLYGKDCRFSHD 178 79999.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSRRSRSQSR SPSRGFRYSD VDDRNRMGAG RSTKPCRDFA VGNCRRGSHC HFLHHDNQSY 60 EDSRESRHRQ DGPRYSNPRE SGDYSLTNRR SDKACINFAK GRCRTGESCR YVHHGKSDGF 120 DKVSAYESSR ERDVDRRHMD ISFKQDGQHN PNHKSNIPCK YFALGNCLYG KDCRFSHDRH 180 SFTSPRLRDD RSRSNQGEDQ VLDRQKMSDS VTPNGRPRDD RWVSDGSMAD VDKVWDGPKQ 240 NDLVAVSDTA KLIEDKKIIS APEPGFMTWP TNDGLDYSLN QNRVHNESPF SIDKKEANCR 300 TEENAVDNIL LSQSLGGGIW PGDEKMSPDW NYGARSSSHI KDEDGHNKHQ VAPGQGLNQN 360 AQNITASHVV GQSQATVSIV PPRARIIEGS GNPVSMTSIK PDPAIGLKQY DPM

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSRRSRSQSR SPSRGFRYSD VDDRNRMGAG RSTKPCRDFA VGNCRRGSHC HFLHHDNQSY  60
EDSRESRHRQ DGPRYSNPRE SGDYSLTNRR SDKACINFAK GRCRTGESCR YVHHGKSDGF  120
DKVSAYESSR ERDVDRRHMD ISFKQDGQHN PNHKSNIPCK YFALGNCLYG KDCRFSHDRH  180
SFTSPRLRDD RSRSNQGEDQ VLDRQKMSDS VTPNGRPRDD RWVSDGSMAD VDKVWDGPKQ  240
NDLVAVSDTA KLIEDKKIIS APEPGFMTWP TNDGLDYSLN QNRVHNESPF SIDKKEANCR  300
TEENAVDNIL LSQSLGGGIW PGDEKMSPDW NYGARSSSHI KDEDGHNKHQ VAPGQGLNQN  360
AQNITASHVV GQSQATVSIV PPRARIIEGS GNPVSMTSIK PDPAIGLKQY DPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	3e-06	C3H family protein