PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH84002.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

CPP

Protein Properties

Length: 303aa MW: 33078.7 Da PI: 8.2548

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH84002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.6	1.8e-16	12	49	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk MCH84002.1 12 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 49 89**********************************96 PP
2	TCR	52.1	1.3e-16	96	134	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN MCH84002.1 96 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 134 589***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
RKSEPVGETE GCKRCNCKKS KCLKLYCECF AAGVYCIEPC SCQECFNKPI HEDTVLQTRK 60 QIESRNPLAF APKVIRSADS VPEVGIDPNK TPASARHKRG CNCKKSSCLK KYCECYQGGV 120 GCSINCRCEG CKNAFGRKDG SASIGIEGEI EEEETETSDK GVEEKAIQKT EIQNIEDHPE 180 SSLVSTPLQL SRPLLPMPFS SKGKPPRSFV TTITGSGYFA SQKLAMPNSL WSQSKPFQTI 240 PDDEMPEILR GDSSPIACIK TSSPNGKRIS SPNCEMGSSP ARRGGRKLIL QSIPSFPSLT 300 SHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-112	CPP family protein