PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH83855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 221aa MW: 24131.6 Da PI: 9.1559 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.4e-10 | 1 | 20 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tGtCkyG++Ck++H++ MCH83855.1 1 YFLKTGTCKYGSTCKYHHPK 20 8*****************96 PP | |||||||
2 | zf-CCCH | 39.3 | 1.1e-12 | 43 | 65 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G CkF+H++ MCH83855.1 43 SCPYYMRTGSCKFGVACKFHHPQ 65 6********************97 PP | |||||||
3 | zf-CCCH | 41 | 3.2e-13 | 178 | 203 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+ tGtCkyG+ CkF+H++ MCH83855.1 178 DQPDCKYFMSTGTCKYGSDCKFHHPK 203 6899********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
YFLKTGTCKY GSTCKYHHPK DRRGAAPVVF NTLGLPMRQE EKSCPYYMRT GSCKFGVACK 60 FHHPQQQASF GAYPVAASPP STTVTSSGFP YAGGFPAWSV PRMSYLSGQA IQSYVPPFMP 120 SSQGIMPALS WSNYMGSISP AMPSGFIGSN LVYDYMNPAG ETLSGGQVMN STLPDRPDQP 180 DCKYFMSTGT CKYGSDCKFH HPKERIAQTL SVNPLGLPMR P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 6e-58 | C3H family protein |