PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MCH82088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 191aa MW: 21304.4 Da PI: 9.7503 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.3 | 8.5e-11 | 52 | 72 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++C+F+H++ MCH82088.1 52 KYYLKTGTCKFGATCRFHHPK 72 79*****************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ MCH82088.1 94 ESECAYYLRTGQCKFGNTCKFHHPQ 118 679********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence |
YCHCKDERRV PRKVRAARMS GMYLFLNECI RCLQSSDLVP SKISSTFDAF LKYYLKTGTC 60 KFGATCRFHH PKDKAGIAGR VALNILGYPL RPNESECAYY LRTGQCKFGN TCKFHHPQPN 120 NMVLSMRGSP AYPTVQSPTT PGQQSYAAGI TNWSSSSYIP SPRWQGPSSY APLILPQGMV 180 SVPGWSTYNV S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-54 | C3H family protein |