PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MCH81544.1

Organism

Trifolium medium

Taxonomic ID

97028

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 398aa MW: 46265.4 Da PI: 5.6308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MCH81544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.2e-22	34	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++A++ GFs+r+++ +++ + ++++kr+fvC ++g +++ k ++ +++r+r+ +r++C a+l+v ke+ ++kw+v+ +++ HnH+l MCH81544.1 34 NFYSSFAQRSGFSIRRHHVYRNttdeGNPQTVYKREFVCHRSGVSKPVKVNELESQRKRKASRCSCSARLVVAKETigsEEKWVVIYFNNVHNHDLL 130 6******************9665555678****************999****************999999************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MSTEVRDEVD IDEIELLTNV DFPQIFDSDD DAYNFYSSFA QRSGFSIRRH HVYRNTTDEG 60 NPQTVYKREF VCHRSGVSKP VKVNELESQR KRKASRCSCS ARLVVAKETI GSEEKWVVIY 120 FNNVHNHDLL DEKEVQFLPA YRNIPVVDQN RILMMHKAGC SINVTMRLLE LEKGIDVGSL 180 PFMDKDIRNF LQNQNGIDKQ NDALDVLKLC KGLKELDDAF QYDYTIDENK KLEHIIWAFG 240 DSIRAYESFG DVVVFDTTYR INRYDMPLGI WLGVDNHGNS VFFGCVLLRN EKISSFTWAL 300 KNFLAFVKGK NPQTILTDQD PSLKEAIANE FPNTKHAFCI WHILAKLPSW FSFVLGARYN 360 DFKSEFFKVY HLDCEDDFEQ YWKSMVAQFG LSWCCCPN

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MSTEVRDEVD IDEIELLTNV DFPQIFDSDD DAYNFYSSFA QRSGFSIRRH HVYRNTTDEG  60
NPQTVYKREF VCHRSGVSKP VKVNELESQR KRKASRCSCS ARLVVAKETI GSEEKWVVIY  120
FNNVHNHDLL DEKEVQFLPA YRNIPVVDQN RILMMHKAGC SINVTMRLLE LEKGIDVGSL  180
PFMDKDIRNF LQNQNGIDKQ NDALDVLKLC KGLKELDDAF QYDYTIDENK KLEHIIWAFG  240
DSIRAYESFG DVVVFDTTYR INRYDMPLGI WLGVDNHGNS VFFGCVLLRN EKISSFTWAL  300
KNFLAFVKGK NPQTILTDQD PSLKEAIANE FPNTKHAFCI WHILAKLPSW FSFVLGARYN  360
DFKSEFFKVY HLDCEDDFEQ YWKSMVAQFG LSWCCCPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-137	FAR1 family protein