PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0253.2.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 387aa    MW: 42864.1 Da    PI: 6.2894
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0253.2.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.52.2e-20953145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         kr en+  rq+t++kR+ngilKKA+EL +LCd++  +++fs+tgk
  Kaladp0101s0253.2.p  9 KRLENSNGRQTTYAKRKNGILKKANELAILCDIDLILLMFSPTGK 53
                         689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MGRVKLKIKR LENSNGRQTT YAKRKNGILK KANELAILCD IDLILLMFSP TGKPSLCCGK  60
RGVEEVISKF AQMTPQERAK RQLEGLEALK KTFKKLDHDV NIQDFLGAST QTVEGLTEQT  120
IQLRTELEET QQRLSYWSDP SRIESIDHLG QLEESLGKSL DAIRARKENL EKQHLILQET  180
TAQIQNELQM PYRVNLEQHY QPLPWIAPND APHIPLAEDP NLIPQREIEC AANSSFAAYS  240
SYLDLCKRAQ SGAFRDDSGF LSELGRSSPL GQLINGQYSL PSYSSNLMGS NTKYPGDTNL  300
QNSFHLEPQP TFGTHPAFDT NHTSWPPTSG PFADAIHSSW ASPCGPLVDG VWGSPSGPCA  360
ATTTSGNWAS PGSYPVALFD EHYQPH*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-77M-type_MADS family protein