PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0054.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 287aa    MW: 30470.1 Da    PI: 10.7599
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0054.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-1796142349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           + +s r vtfskR+ g++ KA+EL +LC+++ a+iifs+ gk + +
  Kaladp0096s0054.1.p  96 LDKQSSRLVTFSKRKSGLFAKASELATLCAVQCAMIIFSPGGKAFSF 142
                          578999************************************97766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MIEEHNLFLR SVWKLMSLEG MIEDTLFLRV MAMVSNTGSI NIGITTANAS LGVEISKSAD  60
VAALPTDSLT TDVLHGGASG GPKRTKGRLK LPLKKLDKQS SRLVTFSKRK SGLFAKASEL  120
ATLCAVQCAM IIFSPGGKAF SFGHPSTDEV VKRYMWGKNA PPIPSNNPLT QNLLEAHRRA  180
NLKALNAQLS EVSLACEAEK KKGKMPGRSK LSRASWNELL GKMNSSELEN VKMRINSLKA  240
HVNNLSGQHA TAGGPRPTGQ VSHPGFGHNL GAGSSSGSFF GGGFGN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-31M-type_MADS family protein