PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0071s0096.2.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 389aa MW: 42997.3 Da PI: 6.2362

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0071s0096.2.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.6	1.2e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq+t++kR+ngilKKA+EL +LCd+++++++fs+tgk Kaladp0071s0096.2.p 9 KRLENSNSRQTTYAKRKNGILKKANELAILCDIDILLLMFSPTGK 53 689****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRVKLKIKR LENSNSRQTT YAKRKNGILK KANELAILCD IDILLLMFSP TGKPSLCCGK 60 RGVEEVIAKF AQLTPQERAK RQLEGLEALK KTFKKLDHDV NIQEFLGTST QTVEGMTEQM 120 VQIRAELEET QQRLSYWSDP SKIESLDHLG QMEASLGKSL DAIRAHKENL EKQQLILQET 180 TAQIQNEMQM PYRVSLEQHY QPLPWIAPNE APHIPLSEDP NLIPQREIEC SGSSSFATYS 240 TYLDLCKRAQ SGAFRDDSGF LSELGRSSPQ LISGQFSFPS YSANLLASDA KYPADTNLQN 300 SVHLEPQPTF GTHPAFDPNH SSWASAAGPF SDTMHSSWAS ACGPLADVTH GVWGSTSGPC 360 SATTANSNWA SPGSYPVALF DEHYQLPH*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRVKLKIKR LENSNSRQTT YAKRKNGILK KANELAILCD IDILLLMFSP TGKPSLCCGK  60
RGVEEVIAKF AQLTPQERAK RQLEGLEALK KTFKKLDHDV NIQEFLGTST QTVEGMTEQM  120
VQIRAELEET QQRLSYWSDP SKIESLDHLG QMEASLGKSL DAIRAHKENL EKQQLILQET  180
TAQIQNEMQM PYRVSLEQHY QPLPWIAPNE APHIPLSEDP NLIPQREIEC SGSSSFATYS  240
TYLDLCKRAQ SGAFRDDSGF LSELGRSSPQ LISGQFSFPS YSANLLASDA KYPADTNLQN  300
SVHLEPQPTF GTHPAFDPNH SSWASAAGPF SDTMHSSWAS ACGPLADVTH GVWGSTSGPC  360
SATTANSNWA SPGSYPVALF DEHYQLPH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	8e-87	M-type_MADS family protein