PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0067s0030.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 481aa MW: 49023.8 Da PI: 5.2029

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0067s0030.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.1	3e-20	23	69	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k r +tfskR++gi+KKA+E+Sv+C+a+v+ i+fs+ gk y + Kaladp0067s0030.1.p 23 IEDKEDRVITFSKRKAGIFKKASEISVMCGAKVLFILFSPVGKAYSF 69 9******************************************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MEMAAVDTKK LTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF 60 SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE 120 AACEQVSALA VAMKFENKGW WEANVSAMSS REEVEQVMKS LSDFEVALTN HFGNIEVQNA 180 GQGSNSNIQP EDVNNFPQMT SWTGGNNLPD VGALGGFESS FGGVSDAGLA AVGYGGALGQ 240 GSDGFSLPAA GNYGGVLGQD SGFSLPTAGN YGGFPGQGND NFSLPVAGNH GGFPGQGNDN 300 FSLPAAGNYG GTLGQDNSFS WPDAGNHGNA LGLGTGFSLP AAGNYGGALG HDNVFSLTVA 360 GNYGGALGHD SGFSLPDGGT YGGALGQGSS HFSLPAGGYG GTPGQGSDHF NFPAVGYGGS 420 GFSVPATGYG GTAGPSEGSS SGGTYNGGNF GAGLYGAGGY GGSFMDGGAP DPASDFQRPY 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MEMAAVDTKK LTKGRQKIQM RLIEDKEDRV ITFSKRKAGI FKKASEISVM CGAKVLFILF  60
SPVGKAYSFG HPSVKSVADK FLGREESDGG KQIRQILENH LNKRLQKLVL HHFVAKSELE  120
AACEQVSALA VAMKFENKGW WEANVSAMSS REEVEQVMKS LSDFEVALTN HFGNIEVQNA  180
GQGSNSNIQP EDVNNFPQMT SWTGGNNLPD VGALGGFESS FGGVSDAGLA AVGYGGALGQ  240
GSDGFSLPAA GNYGGVLGQD SGFSLPTAGN YGGFPGQGND NFSLPVAGNH GGFPGQGNDN  300
FSLPAAGNYG GTLGQDNSFS WPDAGNHGNA LGLGTGFSLP AAGNYGGALG HDNVFSLTVA  360
GNYGGALGHD SGFSLPDGGT YGGALGQGSS HFSLPAGGYG GTPGQGSDHF NFPAVGYGGS  420
GFSVPATGYG GTAGPSEGSS SGGTYNGGNF GAGLYGAGGY GGSFMDGGAP DPASDFQRPY  480
*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	7e-27	M-type_MADS family protein