PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0077.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 314aa    MW: 33688.3 Da    PI: 10.1491
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0077.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.6e-2291138249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                          + e +snr vtfskR+ g++KKA+EL++LC+++ av++fs+ gk++ +
  Kaladp0047s0077.1.p  91 KMEKESNRLVTFSKRKSGLFKKANELCTLCGVRCAVVVFSPAGKVFSF 138
                          67899****************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MASLNAEKSD LAISTITVTT TSSNDVLFNL GASVTVSSTI DAVIVTPSLA MPPPPVPIAP  60
STGSVPNSDV VSAISSGGKK SKGRGKIEMK KMEKESNRLV TFSKRKSGLF KKANELCTLC  120
GVRCAVVVFS PAGKVFSFGH PSVDLVVDRY LTGNLNPIAP KQAWNQVPQN LMEGRRRGPN  180
IENLNSELTN LVAALEASKK HSQELDDRRE ERLASCWWER PVQQMDGGQL DTLKRAMEDL  240
KSKVYHRAGF RWLPSTSSSS PATVPGFNYP CFRGAGPSTR PFSGLPSWNN DHHGPGEAAG  300
PSGNASGVWA RRI*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-43M-type_MADS family protein