PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0045s0451.1.p

Organism

Kalanchoe fedtschenkoi

Taxonomic ID

63787

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 454aa MW: 46693.8 Da PI: 4.6805

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0045s0451.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.6	2.4e-21	23	72	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ie+k r +tfskR++gi+KKA+E+S++C+a+v+ i+fs+tgk y ++ Kaladp0045s0451.1.p 23 KLIEDKEDRVITFSKRKAGIFKKASEISIMCGAKVLFILFSPTGKAYSFA 72 569********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MERSAAAAAM KKTSRGRQKI PMKLIEDKED RVITFSKRKA GIFKKASEIS IMCGAKVLFI 60 LFSPTGKAYS FAHPSVKTVA DKFLGQEESE GGKQIRQILE NHLNKRLEKL LLHHSVARSE 120 LEAVNEQVRA MSAAMESENK GWWEANVSEM SSVEEVEQVM KSISDFEVAL SNHFEKLKQQ 180 TVGGEGSGNI NHIVAPYDQL GDVNIFPPQM NDNVQMPNWA GGNNLSNGGS LGGVDNLFDG 240 VNGAGLCGVG YGGSLPAAGN YGDSLGQGDG FIMPAAGSYG GTLGQGSDYS MLAAANGGAL 300 GQGTDHFSLP AAGNYGSTLG LGNGFSLPVV GNYGGTLDQG NGFSLPVAGN YGGALGQENC 360 FSMPAAGNYG GALGQENCFS MPAAGDGGTG GHTDDVSVWP GGTAFNGAGL YEGGSSGAGY 420 SGDNFGADFY GTGYGGNFMD GLPGPASGFQ GPC*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MERSAAAAAM KKTSRGRQKI PMKLIEDKED RVITFSKRKA GIFKKASEIS IMCGAKVLFI  60
LFSPTGKAYS FAHPSVKTVA DKFLGQEESE GGKQIRQILE NHLNKRLEKL LLHHSVARSE  120
LEAVNEQVRA MSAAMESENK GWWEANVSEM SSVEEVEQVM KSISDFEVAL SNHFEKLKQQ  180
TVGGEGSGNI NHIVAPYDQL GDVNIFPPQM NDNVQMPNWA GGNNLSNGGS LGGVDNLFDG  240
VNGAGLCGVG YGGSLPAAGN YGDSLGQGDG FIMPAAGSYG GTLGQGSDYS MLAAANGGAL  300
GQGTDHFSLP AAGNYGSTLG LGNGFSLPVV GNYGGTLDQG NGFSLPVAGN YGGALGQENC  360
FSMPAAGNYG GALGQENCFS MPAAGDGGTG GHTDDVSVWP GGTAFNGAGL YEGGSSGAGY  420
SGDNFGADFY GTGYGGNFMD GLPGPASGFQ GPC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	2e-24	M-type_MADS family protein