PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0284.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 336aa    MW: 34247.1 Da    PI: 4.6063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0284.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.1e-2181127349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           e ++nr vtfskR+ g++KKA+EL++LC++e a+++fs+  k++ +
  Kaladp0040s0284.1.p  81 MEKETNRLVTFSKRKSGLFKKANELCTLCGVECALVVFSPAEKVFSF 127
                          5889***************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MASSSDQVSN PPVTTSTITS LTVAVSASSP TDAVPVAPSD AMPPPPAPVA PSDAPAPPSD  60
EAPPSSSGVK RGRGKIRMRK MEKETNRLVT FSKRKSGLFK KANELCTLCG VECALVVFSP  120
AEKVFSFGIP SVNDVMDRYL SGNPPNPDPS QPPQPAPVQV PQNTEDGQNQ GQADTLIKKL  180
SDELSNLTDA LEASRQNGLT LDKMREERKA AHWVAIPVSD MGGRQLDALK KGLSDLKGIV  240
CSIAEQLFQA SASMSSVPAP FSFQGAGPPP SGGFPGGPSN YEPDEAGPSG GFPGGPSNYG  300
PDEAGPSGGF PGGPSDYGPN EAGPSGGASG GGFGF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-32M-type_MADS family protein