PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0324.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22910.3 Da PI: 9.8198 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.5 | 5.6e-21 | 19 | 65 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e +sn vtfskRr g++KKA+EL++LC++++a+i+fs+ k++ + Kaladp0016s0324.1.p 19 MEKESNLLVTFSKRRSGLFKKASELCTLCGVQIAIIVFSPGKKVFSF 65 57889999********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MDQIERKNKG RRKIKMAKME KESNLLVTFS KRRSGLFKKA SELCTLCGVQ IAIIVFSPGK 60 KVFSFGHPNV ETIVDRYLTS PNFSSPQPNN NSNINMLEAH RSAKIQELNA EVTQVTTQLE 120 SEKKRGEALD KMRKMNQNKC WWENNVSELN LAQLQHLLVA LEELKIDVAK EAVMGASTSN 180 QIVPYMGTYN DTYPGSNIFN NL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-53 | M-type_MADS family protein |