PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0007s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 26781.5 Da PI: 5.9186 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.2 | 1.8e-12 | 25 | 59 | 8 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42 r++t+ kR+++++KK E+ +LC++++ +ii+s Kaladp0007s0025.1.p 25 GRKITYRKRKETLMKKLDEITTLCGVNAGLIIYSD 59 599******************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence |
MSSSVPRQPR MKSKVVMDLV EDLGGRKITY RKRKETLMKK LDEITTLCGV NAGLIIYSDF 60 EEGGGPLTWP ANPEQVQGVV AQFKSMRWVD LGRKKVEDVE SLVEGRLAKE KLKLAKMQVE 120 NEDKRTRQLL SESLAGIDVT AFSTLDLNGL NWLINEKLKC LRMRMRTEAE NSIPAADNFV 180 LPNPGLHLNS DVTLWDGSAA NHGVDMMRAG SNIAAAPALS GNGVEDQAGP SGEKDQGGNG 240 ADGCAQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65300.1 | 3e-24 | M-type_MADS family protein |