PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0060.1.p
Organism
Kalanchoe fedtschenkoi
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BBR-BPC
Protein Properties Length: 346aa    MW: 38695.4 Da    PI: 9.3509
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0060.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind363.93.1e-11113451301
            GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                          mdd g+re  r+++ +y+        +     +++   +q+m+++aerda+i+ernlalsekk a+aerd aflqrd+a++ern+a++er
  Kaladp0001s0060.1.p   1 MDDGGHREngRHRAdQYKaaqsqwlmQ-----HHQpsMKQIMTIMAERDAAIQERNLALSEKKTAMAERDLAFLQRDNAINERNNAIMER 85 
                          9*****9999****99*9654333331.....3322146*************************************************** PP

            GAGA_bind  78 dnkllalllvensla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrq 154
                          dn+l++l+++e+ ++         +++p+g+q+++g+k++++ qq+      +q ++ +++ r+++++ea  ++  a++a +++    ++
  Kaladp0001s0060.1.p  86 DNALATLQYRETPMNgdngmsqiqTQCPSGCQISRGVKHLHHPQQHVLddenQQHTEAPYNSRDMDITEAISLSPVASDAAKSRG---NK 172
                          ************999999**999999******************94324677888999999999998887776554444444333...44 PP

            GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesad.er............................skaekksidlvlngvslDestlPvPvCsC 215
                          r+k+pk+  ++kk +k++   +kvkk s+  ++                             k+++k +dl+ln v +D++ +P+PvCsC
  Kaladp0001s0060.1.p 173 RTKEPKSVSSNKKVQKNP---NKVKKGSDGfSKhmfgkthewgderdmgsgsddvnkqivvLKSDWKGQDLGLNLVVYDDTIMPPPVCSC 259
                          555555444443333232...233333322222356677889999********************************************* PP

            GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          tG  rqCYkWGnGGWqS+CCtt+iS+yPLP ++++r+aR++grKmS+gaf+klL++LaaeG+dl +pvDLkd WAkHGtn+++ti+
  Kaladp0001s0060.1.p 260 TGNFRQCYKWGNGGWQSSCCTTSISQYPLPSVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLTKPVDLKDNWAKHGTNRYITIK 345
                          *************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MDDGGHRENG RHRADQYKAA QSQWLMQHHQ PSMKQIMTIM AERDAAIQER NLALSEKKTA  60
MAERDLAFLQ RDNAINERNN AIMERDNALA TLQYRETPMN GDNGMSQIQT QCPSGCQISR  120
GVKHLHHPQQ HVLDDENQQH TEAPYNSRDM DITEAISLSP VASDAAKSRG NKRTKEPKSV  180
SSNKKVQKNP NKVKKGSDGF SKHMFGKTHE WGDERDMGSG SDDVNKQIVV LKSDWKGQDL  240
GLNLVVYDDT IMPPPVCSCT GNFRQCYKWG NGGWQSSCCT TSISQYPLPS VPNKRHARVG  300
GRKMSGGAFN KLLSRLAAEG HDLTKPVDLK DNWAKHGTNR YITIK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-137BBR-BPC family protein