PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG92894.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

CO-like

Protein Properties

Length: 387aa MW: 41483.9 Da PI: 6.5001

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG92894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20	1.5e-06	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ ++ + +C+ + +lC +C ++ H g H+ GBG92894.1 3 KPCDACQTATAVVYCRADVAYLCISCDSKVH-GanklasrHE 43 67*****************************.4466676776 PP
2	zf-B_box	22.4	2.6e-07	45	90	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e ++ C+ + lC C e H+ H++vp+ GBG92894.1 45 VWMCEVCEMAPAVVTCKADAAALCFACDGEVHSAnllarrHERVPI 90 689****************************6689999999997 PP
3	CCT	66.9	5.6e-23	321	364	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKrk+RkFeK irY+sRKa+AesRpR+KGrF+k+ GBG92894.1 321 REARVKRYKEKRKNRKFEKIIRYASRKAYAESRPRIKGRFAKRG 364 9****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MPKPCDACQT ATAVVYCRAD VAYLCISCDS KVHGANKLAS RHERVWMCEV CEMAPAVVTC 60 KADAAALCFA CDGEVHSANL LARRHERVPI TPFYEAPSVV KVAHINQSIA LHVAAGGVVG 120 EDALDDFKSD CDGLMKDDDE RTAAEAASWL LPKPASAAKA GISGDDVCGG GLLEVTSRLV 180 ASKDKEQNRQ QQLIKGELPA ADFFADVDPY INLDLDYPLA APGPNDGLVP DNRRSSSSPS 240 LSAGSGGSFD NKLSAATTSN YTYGSPCLSN SLSSSSLEVG VVPDTCVSDI SPPQSYDGAV 300 ASMFEFPPRV IHVGAMQPLA REARVKRYKE KRKNRKFEKI IRYASRKAYA ESRPRIKGRF 360 AKRGDIEAMD HIYSAVPDGA FGVVPTF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MPKPCDACQT ATAVVYCRAD VAYLCISCDS KVHGANKLAS RHERVWMCEV CEMAPAVVTC  60
KADAAALCFA CDGEVHSANL LARRHERVPI TPFYEAPSVV KVAHINQSIA LHVAAGGVVG  120
EDALDDFKSD CDGLMKDDDE RTAAEAASWL LPKPASAAKA GISGDDVCGG GLLEVTSRLV  180
ASKDKEQNRQ QQLIKGELPA ADFFADVDPY INLDLDYPLA APGPNDGLVP DNRRSSSSPS  240
LSAGSGGSFD NKLSAATTSN YTYGSPCLSN SLSSSSLEVG VVPDTCVSDI SPPQSYDGAV  300
ASMFEFPPRV IHVGAMQPLA REARVKRYKE KRKNRKFEKI IRYASRKAYA ESRPRIKGRF  360
AKRGDIEAMD HIYSAVPDGA FGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-83	CO-like family protein