PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG91843.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 671aa MW: 72944.7 Da PI: 9.0378

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG91843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.9	1.4e-09	433	507	2	69
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + ++L++ +re + +l r k k+ +W++vsk+m+ g + + C +kw+nl ykki++ ++ GBG91843.1 433 WSAEDQMLLVRCKREQDMHLAglyhnygRMKTKEWKWDDVSKRMANAGRPKDADDCMKKWDNLFLNYKKIQRFQN 507 8888888999999966666654444333789**************************************998665 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MRSGTSTCAG RQTELLRAAR AATVDFQKEG RHVSRLLCWL SAYEGRAPLS QACRNTHLQW 60 SRARAAAEVN FMADVQRRCP LLVLAVVVFL IVVFLHVCLS WRSWKQQLKR RASTRRAAGE 120 RLMAGMQARA ATAAGQGGVR TSAAEPPRRY DPSMYTHLES WETPLPPSDE EPEKEELSTL 180 PLASGSTQLW SQTVRAGGSA ADEGGEFTSL LHQGLRDDDG GGVDLRFGLC SGGGREASRT 240 FIIDGDRPAR GLEHGGSLHT EQSTLHRAAP VTGAVGPSPA GWQHGSTAPS VERLTPTWPA 300 RTGVAAGSLR MGGARSSMPA CTTPIESEAR DEGTCRASVR PRPTVENIIR GVSNMRAHSD 360 ARQDDGGFGD DADEGMREDV EAGDDDDDVP IRPLGKTGRR GKGCGRGGVR GRSVARGSKG 420 GVSDDVGKSP TYWSAEDQML LVRCKREQDM HLAGLYHNYG RMKTKEWKWD DVSKRMANAG 480 RPKDADDCMK KWDNLFLNYK KIQRFQNASG QADFFRLTNE ERKEHNFKLR MDRALYNEIH 540 AGIVGNHTIF PPNVADTGSP KRVQLPRRGA GGGESVCSEA AGEGCPEECS SARESDNNAG 600 SGAGGGKRKN ARQQALESPG SPTSHHSSKS WLPRPQPTLV VFVKVRCFQE MKEKCSFRPK 660 SCATLQDAAP A

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MRSGTSTCAG RQTELLRAAR AATVDFQKEG RHVSRLLCWL SAYEGRAPLS QACRNTHLQW  60
SRARAAAEVN FMADVQRRCP LLVLAVVVFL IVVFLHVCLS WRSWKQQLKR RASTRRAAGE  120
RLMAGMQARA ATAAGQGGVR TSAAEPPRRY DPSMYTHLES WETPLPPSDE EPEKEELSTL  180
PLASGSTQLW SQTVRAGGSA ADEGGEFTSL LHQGLRDDDG GGVDLRFGLC SGGGREASRT  240
FIIDGDRPAR GLEHGGSLHT EQSTLHRAAP VTGAVGPSPA GWQHGSTAPS VERLTPTWPA  300
RTGVAAGSLR MGGARSSMPA CTTPIESEAR DEGTCRASVR PRPTVENIIR GVSNMRAHSD  360
ARQDDGGFGD DADEGMREDV EAGDDDDDVP IRPLGKTGRR GKGCGRGGVR GRSVARGSKG  420
GVSDDVGKSP TYWSAEDQML LVRCKREQDM HLAGLYHNYG RMKTKEWKWD DVSKRMANAG  480
RPKDADDCMK KWDNLFLNYK KIQRFQNASG QADFFRLTNE ERKEHNFKLR MDRALYNEIH  540
AGIVGNHTIF PPNVADTGSP KRVQLPRRGA GGGESVCSEA AGEGCPEECS SARESDNNAG  600
SGAGGGKRKN ARQQALESPG SPTSHHSSKS WLPRPQPTLV VFVKVRCFQE MKEKCSFRPK  660
SCATLQDAAP A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein