PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88942.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 578aa MW: 62893.8 Da PI: 10.6612

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.5	6.2e-12	227	302	2	70
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ + +L++a+r +m+++++r k ++ +We+v ++ + g++r+++ C +kw+nl +++kk + g++ GBG88942.1 227 WSVGDTITLMRAKRdqdlyfaDMGHNFGRMKTREWKWEDVRVRLDKAGVTRKAVNCGKKWDNLMQQFKKSRPGAIA 302 8899999*****9999999**********************************************9977665 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MLNEGLCSDD GNVGADLTFQ LSSSSGAAVT PTRIINPHPD GDCAEQTWVA PCGARDGGQA 60 QMLHDGGGNR YLSSVASVGG GGSGDHRPEW MRSSPASGSG SRTPRRRERH LDASAAGADV 120 ERMGRQVWAE CRQALRPPGT ESITKGVQWL DVNEGDDMAD HELYDCDDVD GEEGYNSEEL 180 PDIRSFGRKA KGGRGGGRKG STTRNQRNKK MDDDPKFSDG EGARNFWSVG DTITLMRAKR 240 DQDLYFADMG HNFGRMKTRE WKWEDVRVRL DKAGVTRKAV NCGKKWDNLM QQFKKSRPGA 300 IALLASSPQS FLTTFVALLA SSSRSSLTTY PISSCLSVVD PCSSSPQRQS SPYCRQCRRG 360 SKSPLLSPNR RGDFSPRGGS ASSLLSPYRR RRLSPHGGLA PSLFSPNRLG ALSPCRGSAS 420 SLFSPYCRGA LSLRRGSPRS SLAASRFAAE LSRQHEPCQR ELPPVVGSGI AHASTAKGGP 480 EVGDMSPRRR GVVRTAVQEA YLLMERKVGR EPQKATTTTS SRRRKKRWRR PCLSCVRVAA 540 SGCLSKPRAG TRRLWSMLAA MMTSSWNNVA RVLLPKPA

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MLNEGLCSDD GNVGADLTFQ LSSSSGAAVT PTRIINPHPD GDCAEQTWVA PCGARDGGQA  60
QMLHDGGGNR YLSSVASVGG GGSGDHRPEW MRSSPASGSG SRTPRRRERH LDASAAGADV  120
ERMGRQVWAE CRQALRPPGT ESITKGVQWL DVNEGDDMAD HELYDCDDVD GEEGYNSEEL  180
PDIRSFGRKA KGGRGGGRKG STTRNQRNKK MDDDPKFSDG EGARNFWSVG DTITLMRAKR  240
DQDLYFADMG HNFGRMKTRE WKWEDVRVRL DKAGVTRKAV NCGKKWDNLM QQFKKSRPGA  300
IALLASSPQS FLTTFVALLA SSSRSSLTTY PISSCLSVVD PCSSSPQRQS SPYCRQCRRG  360
SKSPLLSPNR RGDFSPRGGS ASSLLSPYRR RRLSPHGGLA PSLFSPNRLG ALSPCRGSAS  420
SLFSPYCRGA LSLRRGSPRS SLAASRFAAE LSRQHEPCQR ELPPVVGSGI AHASTAKGGP  480
EVGDMSPRRR GVVRTAVQEA YLLMERKVGR EPQKATTTTS SRRRKKRWRR PCLSCVRVAA  540
SGCLSKPRAG TRRLWSMLAA MMTSSWNNVA RVLLPKPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	393	YRRRRL
2	522	527	RRRKKR
3	522	530	RRRKKRWRR