PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88796.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 536aa MW: 58175.1 Da PI: 6.8968

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.9	9.4e-12	279	352	2	68
trihelix 2 WtkqevlaLiearremeerlrr.......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+ +e l+L++ ++e e +l r + k ++W++++k+m++ g + + C +kw+nl + ykki++ + GBG88796.1 279 WSPEEQLQLVRCKQEQEMHLARlghnygrMRTKDGKWDAIAKRMASAGKPKDADDCMKKWDNLFQNYKKIQRFQ 352 9***********77777765322221157************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MYAHLQSWET PPPSDEEPET EELSTLPLAS DSTQLWSQTA RAGSSGCNKG GEYTSLLQQG 60 LGDDDNGGLD LRFGLCYGGS KEASRTLIID TDPSPRGVGQ GGSQRTDQTT LRARASVAVS 120 VGLSAVLRRQ GSTAPFADRS TSNWPARNGA AVGSPRVECA RPSMPERTTP TQSDVRDAGA 180 CRPPVRRVPT VENITRGVSN MRAHSDGDND DGVGGDDADE RLTENVDAGD DDEDIPVRPS 240 GKTGGRGRAR SRGAVRGRSV GRSGRGCVSD DAGKSVTYWS PEEQLQLVRC KQEQEMHLAR 300 LGHNYGRMRT KDGKWDAIAK RMASAGKPKD ADDCMKKWDN LFQNYKKIQR FQNASGRPDF 360 FGLTNEERKE HNFKFRMERA LYNEIHAGML GNHTIFPLNI AGTGNPDGVQ LPRRGGGGGE 420 SVGSEAGGEG FPEERSSARE SENNAASGAG GGKRKNARQQ ALESIADVMD RHGELMSSTI 480 ESSSKRQCSI FTRQCDILEQ EVAVHKEHYA ASNETQRMMY HTLLEIAAAI RGQRTM

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MYAHLQSWET PPPSDEEPET EELSTLPLAS DSTQLWSQTA RAGSSGCNKG GEYTSLLQQG  60
LGDDDNGGLD LRFGLCYGGS KEASRTLIID TDPSPRGVGQ GGSQRTDQTT LRARASVAVS  120
VGLSAVLRRQ GSTAPFADRS TSNWPARNGA AVGSPRVECA RPSMPERTTP TQSDVRDAGA  180
CRPPVRRVPT VENITRGVSN MRAHSDGDND DGVGGDDADE RLTENVDAGD DDEDIPVRPS  240
GKTGGRGRAR SRGAVRGRSV GRSGRGCVSD DAGKSVTYWS PEEQLQLVRC KQEQEMHLAR  300
LGHNYGRMRT KDGKWDAIAK RMASAGKPKD ADDCMKKWDN LFQNYKKIQR FQNASGRPDF  360
FGLTNEERKE HNFKFRMERA LYNEIHAGML GNHTIFPLNI AGTGNPDGVQ LPRRGGGGGE  420
SVGSEAGGEG FPEERSSARE SENNAASGAG GGKRKNARQQ ALESIADVMD RHGELMSSTI  480
ESSSKRQCSI FTRQCDILEQ EVAVHKEHYA ASNETQRMMY HTLLEIAAAI RGQRTM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-06	Trihelix family protein