PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88421.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 584aa MW: 62378.4 Da PI: 7.8927

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	401	478	2	72
trihelix 2 WtkqevlaLiearr..emeerlrrg.....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 W +e l+L++ + ++ee+ +r+ k+k + W++v + m+erg+ +++ C +kw+ l +++++++ +k GBG88421.1 401 WNVEEQLLLVRCKIdyDLEESHGRSsvkrfKSKDTVWSKVTALMAERGVVKEQYACSQKWDTLMSHMRRVRDHHRKSG 478 6667777777666533333443333222237******************************************99853 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MGVGNVSEPR SRSFEDRPHT VPQSSREEFD LNRQQHGGWP RGFDHMENGS HPAIAHRHQM 60 EAMLGEAEGT PSSQPRSCLT CDTVSISPWH HMGNASHPAS AHRHRTAAML GETEGTPSSQ 120 PRSCLTSDTV PISPWHHMEN ASHPASAHRH QMVAMLGETE GTPSSQPRSC MTGDTVSVSP 180 WRASIIDDSD PFGPHMSGSP STYCTPSQMT HAALLASYGQ ARPGSTFNGS SGYGVHVGSS 240 SQFWPSNCPG GRMHQPALGS DQPLLGSDEA RRSAWRQTPP AVSGPMAPTP FRDSLPNSVA 300 GSPSPTISPG NVSSMDESGS GSKKSPAHTP LKGKGRGGKR TNDKNAGGIG NGKAAAGSKV 360 DGDDDGTDVD GGVGAQEEVP TAAPEGGAVG AQSGAQPHVV WNVEEQLLLV RCKIDYDLEE 420 SHGRSSVKRF KSKDTVWSKV TALMAERGVV KEQYACSQKW DTLMSHMRRV RDHHRKSGAE 480 DYFTMTTKVR KMKKLDFCMQ RPVYDLMSPT RKIRLKATAS AFSSVREAQK ENTTMIVGVM 540 DMMNSTIEAN GTALFGAVAL IAQAFMTTAS APEATSSAPS RGST

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MGVGNVSEPR SRSFEDRPHT VPQSSREEFD LNRQQHGGWP RGFDHMENGS HPAIAHRHQM  60
EAMLGEAEGT PSSQPRSCLT CDTVSISPWH HMGNASHPAS AHRHRTAAML GETEGTPSSQ  120
PRSCLTSDTV PISPWHHMEN ASHPASAHRH QMVAMLGETE GTPSSQPRSC MTGDTVSVSP  180
WRASIIDDSD PFGPHMSGSP STYCTPSQMT HAALLASYGQ ARPGSTFNGS SGYGVHVGSS  240
SQFWPSNCPG GRMHQPALGS DQPLLGSDEA RRSAWRQTPP AVSGPMAPTP FRDSLPNSVA  300
GSPSPTISPG NVSSMDESGS GSKKSPAHTP LKGKGRGGKR TNDKNAGGIG NGKAAAGSKV  360
DGDDDGTDVD GGVGAQEEVP TAAPEGGAVG AQSGAQPHVV WNVEEQLLLV RCKIDYDLEE  420
SHGRSSVKRF KSKDTVWSKV TALMAERGVV KEQYACSQKW DTLMSHMRRV RDHHRKSGAE  480
DYFTMTTKVR KMKKLDFCMQ RPVYDLMSPT RKIRLKATAS AFSSVREAQK ENTTMIVGVM  540
DMMNSTIEAN GTALFGAVAL IAQAFMTTAS APEATSSAPS RGST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-07	Trihelix family protein