PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG88345.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

C2H2

Protein Properties

Length: 901aa MW: 94146.1 Da PI: 6.991

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG88345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	454	478	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F+++ +L+ H +tH GBG88345.1 454 FRCShaGCEKTFKNQQTLMMHHKTH 478 89**********************9 PP
2	zf-C2H2	13.6	0.0002	508	529	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp Cg++F ++L+rH + H GBG88345.1 508 CPECGRTFVGLYELRRHYGRkH 529 *****************86666 PP

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence
MSLPVPSTVS TTTSVTASLM HQQYEGAESV SVSGVGMLPR SFLPVASLGS APPPPQCVQV 60 RSTATVSVLD GREAHQDAAA TTTSSAAALA AAAAGGGGGG GGSFSLEDPV LGTAPMSTSG 120 FSLDIPTALQ LSVAAQEAVA SAAAATAAAV AAAGAEAVVM PARTEDDMLK SIGAQQGCSP 180 ASEDSDPLPI APVPLSSGPA VLSSPMPTPT ISSDSTVTTT APLPMPFKTL TASCPAVASA 240 TAEFTTICSS SAMPINPMSV LSHHGGEEGG GGGAGVSDGL AVAPFDLASV VGGAGIGVID 300 VADPLTLAKV IQLNHEHEQR QQAAARGVII KDELQQHGIT VVTASAAMAT AVAVSEAIGV 360 PSATPSSLPP PLPPPPPPSP SPPLQSLCTP TSSATVLSPS PLPPTSLQLH DIPVAHPLTS 420 LKRAYDLAAG GDEPPPPRLP NVVSVEFIQN RRPFRCSHAG CEKTFKNQQT LMMHHKTHFV 480 EDGSLKLDME GIPMGVRAGR NKKIPSCCPE CGRTFVGLYE LRRHYGRKHS QGEKMFSCKK 540 CGKKFFIDVD LRDHEKFCGE AIQCRCGMKF AYKCNLVAHK KANPACQGGG PGQVHHHNHH 600 HYQQQQQQQR QQQQQVTGSA ARQQRQQHAL AAVAAAEGQR YKKLSSSSAS SSTCAASSSP 660 LALGSLSRAT MATNATTPIG PAVFHIHLPH QRQQLDQQLQ QQQQQQHPHH NHHHHHLHHP 720 HQTQMGAVTA VTQGVPMTVP LLPYVLTMPL PSATAVSSAF ARDGGHLTGL QLQSSQPVLS 780 IFDASRGSSH VQSPAAAMAV VRGSNGRGMV KHDVGGITRG RSGRRGMRRQ VEDADRVGDE 840 GERMKRGKEA EEAEEEEEEE EEEEETYGDG IAMLLMTSGW SPHPSSLLWD HKVPASVTSE 900 L

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence

MSLPVPSTVS TTTSVTASLM HQQYEGAESV SVSGVGMLPR SFLPVASLGS APPPPQCVQV  60
RSTATVSVLD GREAHQDAAA TTTSSAAALA AAAAGGGGGG GGSFSLEDPV LGTAPMSTSG  120
FSLDIPTALQ LSVAAQEAVA SAAAATAAAV AAAGAEAVVM PARTEDDMLK SIGAQQGCSP  180
ASEDSDPLPI APVPLSSGPA VLSSPMPTPT ISSDSTVTTT APLPMPFKTL TASCPAVASA  240
TAEFTTICSS SAMPINPMSV LSHHGGEEGG GGGAGVSDGL AVAPFDLASV VGGAGIGVID  300
VADPLTLAKV IQLNHEHEQR QQAAARGVII KDELQQHGIT VVTASAAMAT AVAVSEAIGV  360
PSATPSSLPP PLPPPPPPSP SPPLQSLCTP TSSATVLSPS PLPPTSLQLH DIPVAHPLTS  420
LKRAYDLAAG GDEPPPPRLP NVVSVEFIQN RRPFRCSHAG CEKTFKNQQT LMMHHKTHFV  480
EDGSLKLDME GIPMGVRAGR NKKIPSCCPE CGRTFVGLYE LRRHYGRKHS QGEKMFSCKK  540
CGKKFFIDVD LRDHEKFCGE AIQCRCGMKF AYKCNLVAHK KANPACQGGG PGQVHHHNHH  600
HYQQQQQQQR QQQQQVTGSA ARQQRQQHAL AAVAAAEGQR YKKLSSSSAS SSTCAASSSP  660
LALGSLSRAT MATNATTPIG PAVFHIHLPH QRQQLDQQLQ QQQQQQHPHH NHHHHHLHHP  720
HQTQMGAVTA VTQGVPMTVP LLPYVLTMPL PSATAVSSAF ARDGGHLTGL QLQSSQPVLS  780
IFDASRGSSH VQSPAAAMAV VRGSNGRGMV KHDVGGITRG RSGRRGMRRQ VEDADRVGDE  840
GERMKRGKEA EEAEEEEEEE EEEEETYGDG IAMLLMTSGW SPHPSSLLWD HKVPASVTSE  900
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-14	C2H2 family protein