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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GBG87806.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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| Family | GATA | ||||||||
| Protein Properties | Length: 1529aa MW: 158452 Da PI: 8.0313 | ||||||||
| Description | GATA family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GATA | 60.3 | 2.4e-19 | 1083 | 1117 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C+ Cgt+kTplWR+gp+g+k+LCnaCG++y+k g+
GBG87806.1 1083 CVECGTSKTPLWRNGPRGPKSLCNACGIRYKKAGK 1117
********************************886 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1529 aa Download sequence |
MMCSSRRRLE DNGKEEEEEE EEGEEGEGKL HSHGGNALHT QSKALVSISI AYKRVILSLR 60 APVRRYARVR REEWVIAKKR RRRCEEEGRQ GGGGGGGGGG GEERREGWLV AISNDVSLNI 120 HRHRAAACLS GSRALSEMDR ELRTVGPSSN GGAPRGTFLN DADDNPIAET IHQGGEGGRG 180 TEALSAESRF MTFGKALNCV LASWIAAQRR IAAGTYQLAN MDRKKVIMGV QKESGAEGGI 240 GVGGVGGVGV GGVGGGQEQP SLGGCSGVSK VSATMATVGE SWTLTSTGCH VPTRRLSDRN 300 TKAGAAVFPS LLLEGGPVDV NGKPSEGNIV DGGEQQWKVC APCTSSGSVA AAAGAAAAAA 360 TAMVATVTAA GAGAAGVGVG VGVAGGSRAS LKLEFSGSHH RSHPLYDQSH QSHTIFRHPA 420 KGPSSRRSTP GSLCHHHHHH NYLPHLPLRA TATAPPPPPP PPLSPPLPSP SVPSAPGASA 480 VPPPPPHSYH SFSLHQPHIQ PHCLLPSTSA PACRSLHASV PSPSLAATME TTTSTATAKR 540 KTPGDSLLPA AEQAPFVAVV VPSPIMAQGN SKLTMVGTIP NSIPLSENCP NGTNSRDRDQ 600 SDSEATIPMV VSCSEDDDED TEDDEEVQKV QAERQKQVLS ANNVSHCAPE AAALQGWVTC 660 YCMPNAPNAE AGAKVPAAAG EMSSDAAAQM SAAKSKGRGS GAFKAHNDID LAALTAARLK 720 ERGGGRAIKG NGERLRRRRA PPIKEEEEEE DDDNDDDEDD DDDDDDDDDE EMDKEKTECK 780 KGAYYARRRL VKRGNNKIAE TTATGLRMTV RGGAGTGRTA RVYGQPSVTK RHNKSAPMSG 840 GAPHLGNLHG PPGGSAMGTV AATNQQNVTR SATVMAAMSA AKDPPSRQGP EAAQGMRRGE 900 GADRGAEAGL VRGSFLSDSD ATGGGGLPRK VGGSRSSVTG TRRSPNVVLN GPGAMGSCAG 960 RTGVGGGRRG VGGETCHPSR SASSSWSLQG CNISAERSPA SDRNADREGN TGEPMVLDDD 1020 GERRGTTPRD RRHNQDVDDD RGTSACHGGD LKRGCNAAGV MGGGSEAGSP PNNKPGCGGP 1080 RVCVECGTSK TPLWRNGPRG PKSLCNACGI RYKKAGKLRA LEGKGMDSNE PIIIPPGGRA 1140 NRTNKKPVGG KKCKPSDNQE VTPASATLAT PGPVHGSEET AAVAVAIGKP QDGPVVAGMR 1200 KRTSAASVEC PQQSQAMRKG NSQNASALEG VAKPRGILWA GSTQIKKGLF LADPPGCDGS 1260 RGGGGGGLPG GGGGAGGERG AGGAGGRGAE GGQSAATGDQ RRDVREDVPP AENVSPSKNG 1320 LAKPNCMPKN DCPSRNDFLS KKDLQPKTDC PSKNDSSLKS GLLSRNGLSW TERDEEDERV 1380 DDDEGRIDRT GSSADSCVTL QGSPSTASWP LKTKWKKFAR SEAMAAEALF PRVSSPPVPT 1440 PADLRSRCME PPGNWGGKKR ARVVDRVGES APGIAPQHAL GSDCEDQKAK PRMEFDFLQE 1500 TDSEGHGMTD EVQGAILLMA LFKGCPCPA |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 78 | 83 | KKRRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G18380.1 | 6e-14 | GATA family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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