PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GBG87516.1
Organism
Chara braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
Family Trihelix
Protein Properties Length: 434aa    MW: 47017.8 Da    PI: 8.6349
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GBG87516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.62.1e-10177251269
    trihelix   2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                 W+ +  ++L++ +r        + ++++r k k+ +We+ sk+m+  g  + +  C +kw+nl + ykki++ ++
  GBG87516.1 177 WSAEDQMLLVRCKReqdmhlaGLSHSYGRMKTKEWKWEDMSKRMANAGRPKDADDCMKKWDNLFQNYKKIQRFQN 251
                 8888889999999944444444455555789**************************************987655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MVEVCIWSSP HAALVTSPVG PLPAGQQHGS TAPSVDRLTP TWPAPPGVAA GPLRMGGARS  60
LMPAYTTPVE SGVKDEGTCR VPVRPRPTVE NITRGVPNMR AHSDGGEDDV GFGDDADEGM  120
REDVEAGDDD DDVPIRPLGK TAGTEKGRGR GGVRGRSVGR GGRGGVSGNA GKSPTYWSAE  180
DQMLLVRCKR EQDMHLAGLS HSYGRMKTKE WKWEDMSKRM ANAGRPKDAD DCMKKWDNLF  240
QNYKKIQRFQ NASGRPDFFR LTNKERKEHN FKFRMGRALY NKIHAGMVGN HTIFPPNVVD  300
TGSPDGVQLP RRGAGGGESV CSEAAGEGCP DERSSARESD SNVVSGAGGG KRKNARQQAF  360
ESISDVMERH GALMSSMIES SSKRQCSIFT RQCDILEQEV AVQKAHYAAS DETQRMMCKA  420
LLEIAAAIRG RSAM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-08Trihelix family protein