PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84668.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

NF-YA

Protein Properties

Length: 512aa MW: 53662.8 Da PI: 7.1397

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.7	6.9e-32	242	298	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e++l k+rkpylheSRh hAlrR+Rg+gGrF GBG84668.1 242 EEPVYVNAKQYHGILRRRQCRAKLEAENQL-LKTRKPYLHESRHLHALRRARGCGGRF 298 69**************************.9***********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MQTISSGAPA LAGGVASGSP VVGGVPVHHA DRSAAAAASL AANGIIPAAP AGPSPFVATP 60 GVPVLVDQPP QQSTSPLAAA PTLGIQSGPF LTAGIVPAST QIFGTAPGRA RGLEDQQQQV 120 APATGIAAQS EYLIPSIHLE LGSSLQRPAY PYDPYYEEER NWREEIAGGD GGRRRIGGGG 180 GEVAEAGEER EHLAGGGRGE VGGGRGRGGG AGRRISNTTP EIPHMLGMQQ ARVPLPSELM 240 EEEPVYVNAK QYHGILRRRQ CRAKLEAENQ LLKTRKPYLH ESRHLHALRR ARGCGGRFLN 300 TKAQDTRKQA DGQDLPQQQQ QQDQQLEQQE EGRQSQSPRR RSMSEQQQSE DEGQQHQEKS 360 AGFNDRSRLL QRASEDGLPA EPQGNAEDSD CRSHESRDGQ GGHQPTAGRQ GRESCSGGLS 420 GADARAGASV GGGYHHQSGV NLNSRTGMGL GSGGSILGMS SEDGGGYFHR NQSFHPSAFR 480 PVTGSGTDSD RKVPPSGGLV SNPGQATAVA TH

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MQTISSGAPA LAGGVASGSP VVGGVPVHHA DRSAAAAASL AANGIIPAAP AGPSPFVATP  60
GVPVLVDQPP QQSTSPLAAA PTLGIQSGPF LTAGIVPAST QIFGTAPGRA RGLEDQQQQV  120
APATGIAAQS EYLIPSIHLE LGSSLQRPAY PYDPYYEEER NWREEIAGGD GGRRRIGGGG  180
GEVAEAGEER EHLAGGGRGE VGGGRGRGGG AGRRISNTTP EIPHMLGMQQ ARVPLPSELM  240
EEEPVYVNAK QYHGILRRRQ CRAKLEAENQ LLKTRKPYLH ESRHLHALRR ARGCGGRFLN  300
TKAQDTRKQA DGQDLPQQQQ QQDQQLEQQE EGRQSQSPRR RSMSEQQQSE DEGQQHQEKS  360
AGFNDRSRLL QRASEDGLPA EPQGNAEDSD CRSHESRDGQ GGHQPTAGRQ GRESCSGGLS  420
GADARAGASV GGGYHHQSGV NLNSRTGMGL GSGGSILGMS SEDGGGYFHR NQSFHPSAFR  480
PVTGSGTDSD RKVPPSGGLV SNPGQATAVA TH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	179	GGRRRIGGG
2	195	203	GGRRRIGGG
3	196	204	GGRRRIGGG
4	202	210	GGRRRIGGG
5	203	211	GGRRRIGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	7e-37	NF-YA family protein