PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84152.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 1189aa MW: 126527 Da PI: 4.1461

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	34.1	7.1e-11	479	554	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ ++ aLi+a+r+ + +l+++ ++ +W +v +++ + g+ r + +C +kw+nl +++kk+ + ++ GBG84152.1 479 WSVEHMVALIRAKRDQDAQLQASGhnfarmrTREWKWLDVRERLLKVGVDRPADKCGKKWDNLMQQFKKVHAFMGM 554 99***********99999986333444449999********************************9886665 PP

Sequence ? help Back to Top
Protein Sequence Length: 1189 aa Download sequence
MCLAGTRRPF EGGRGVGGLA ASGGDTAALG GVAATVFFRP PVGRRFADGV AVVARLAAVA 60 DKVVVARIGW PDAGFVVAAG AVRVAVACGA VPAALAAGAK IAPLHIPAAL VIADGGGVIA 120 KANAAACALA PVVVVVAVAA AFEPRFVALA SVVVAYVAGI VSPAGESADS ARFVVADGDY 180 VARGIVVDQA TTGVPFRPAS VWGCGFGAQE GLAGVHIGEV AFTYSQERRG EEERGHGREA 240 AESEDVVRPL SRRPDSDLCR CRQKGGSPXS XTRTVLVNPH PDDDAGQVTF GGRGTRGGAA 300 AEVTSGKTTA WPRTXATSGP SVXRTVGQXP EWMTLSPPLS GGRDGVHRPV DRVVTHEDFP 360 SEGAHGDGRR VWKEARQELR RQQEESITQG VERLRVGERS GQADVAARGG DAWTNVGEFQ 420 CDVDDDDSGD VFPLRAPNMG GRGDRGSTST RAVRRRTRTF AVSADAEGEG DGEGGQNFWS 480 VEHMVALIRA KRDQDAQLQA SGHNFARMRT REWKWLDVRE RLLKVGVDRP ADKCGKKWDN 540 LMQQFKKVHA FMGMRGKEDF FQLTSQQRAE KGFNFNMDRA VFEEIKGARE RSHTISPTNV 600 ADTGRAAGVQ LPSAQSATPE FVGDGEAAGD GNDEDDNSAR GGSQASGGPA GFRKRKNVLQ 660 QTFEALLECI DKHGALMALT MESASRRKCE TMESASKRQC SIQIRQCEAI EAEVEIQKQH 720 CAASTEVVRP SAVSSTSRPP STSFVFTAMM NTHNAAKGKR GRESNQGEVA TAVKRGRHQA 780 KKAKASGGGA LVIGRSAREE WITEASNEDD DDFESEADTF HGVKGSLCEQ TAARMISGDE 840 GGKGGNKGGL GVARGDNDAG GDVAAGAAGR DDRGRQVTPT MRNPVQARDV TAPHDIGREQ 900 PLRASSTQAT PAAGHARREV GAAVTAASRP QPPVRIGTKD VVAVGAIAGT STGGAEGGGG 960 DDRDVDDDDD PLMNRQRRSG GLAALETKAQ LWTRGRRERW SRTACDDDGD VDDDDDDDDG 1020 DDDDDGDDDD EGGDDGVDDA DDQDGGDDDD DDDDDDDDDD DDDDEDDDDD DNDDDDQDDD 1080 NDDDDDDDDE DDDNDDDDDD DQDEDDDDDN DDDDDEDDDD VDVDDDDDDD DDDDDDDDDD 1140 DDNDDDDDDD DDDDGADGRV RWSSLVVGAH TRRRQIPWAF RNPVQCNFL

Sequence ? help Back to Top

Protein Sequence Length: 1189 aa Download sequence

MCLAGTRRPF EGGRGVGGLA ASGGDTAALG GVAATVFFRP PVGRRFADGV AVVARLAAVA  60
DKVVVARIGW PDAGFVVAAG AVRVAVACGA VPAALAAGAK IAPLHIPAAL VIADGGGVIA  120
KANAAACALA PVVVVVAVAA AFEPRFVALA SVVVAYVAGI VSPAGESADS ARFVVADGDY  180
VARGIVVDQA TTGVPFRPAS VWGCGFGAQE GLAGVHIGEV AFTYSQERRG EEERGHGREA  240
AESEDVVRPL SRRPDSDLCR CRQKGGSPXS XTRTVLVNPH PDDDAGQVTF GGRGTRGGAA  300
AEVTSGKTTA WPRTXATSGP SVXRTVGQXP EWMTLSPPLS GGRDGVHRPV DRVVTHEDFP  360
SEGAHGDGRR VWKEARQELR RQQEESITQG VERLRVGERS GQADVAARGG DAWTNVGEFQ  420
CDVDDDDSGD VFPLRAPNMG GRGDRGSTST RAVRRRTRTF AVSADAEGEG DGEGGQNFWS  480
VEHMVALIRA KRDQDAQLQA SGHNFARMRT REWKWLDVRE RLLKVGVDRP ADKCGKKWDN  540
LMQQFKKVHA FMGMRGKEDF FQLTSQQRAE KGFNFNMDRA VFEEIKGARE RSHTISPTNV  600
ADTGRAAGVQ LPSAQSATPE FVGDGEAAGD GNDEDDNSAR GGSQASGGPA GFRKRKNVLQ  660
QTFEALLECI DKHGALMALT MESASRRKCE TMESASKRQC SIQIRQCEAI EAEVEIQKQH  720
CAASTEVVRP SAVSSTSRPP STSFVFTAMM NTHNAAKGKR GRESNQGEVA TAVKRGRHQA  780
KKAKASGGGA LVIGRSAREE WITEASNEDD DDFESEADTF HGVKGSLCEQ TAARMISGDE  840
GGKGGNKGGL GVARGDNDAG GDVAAGAAGR DDRGRQVTPT MRNPVQARDV TAPHDIGREQ  900
PLRASSTQAT PAAGHARREV GAAVTAASRP QPPVRIGTKD VVAVGAIAGT STGGAEGGGG  960
DDRDVDDDDD PLMNRQRRSG GLAALETKAQ LWTRGRRERW SRTACDDDGD VDDDDDDDDG  1020
DDDDDGDDDD EGGDDGVDDA DDQDGGDDDD DDDDDDDDDD DDDDEDDDDD DNDDDDQDDD  1080
NDDDDDDDDE DDDNDDDDDD DQDEDDDDDN DDDDDEDDDD VDVDDDDDDD DDDDDDDDDD  1140
DDNDDDDDDD DDDDGADGRV RWSSLVVGAH TRRRQIPWAF RNPVQCNFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-08	Trihelix family protein