PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG84136.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 939aa MW: 102852 Da PI: 7.9871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG84136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.8	3.7e-10	79	153	2	69
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 W+ + ++L++ +r +++++r + k+ +W++++k+m+ g r + C +kw+nl + ykki++ ++ GBG84136.1 79 WSPEDQMLLVRCKRkqdmhlvGFGHNYGRMRTKEWKWDDIAKRMANAGRPRDADDCMKKWDNLFQNYKKIQRFQN 153 7777777888888833333333345555778**************************************998665 PP

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence
MQAHSDGGDD DGGGGDNADE RLMEDVEAGD DNDDIHIRPL GKTGGRGRGR SRGAVRGRSI 60 GRGGRGGGDD DGGKSATYWS PEDQMLLVRC KRKQDMHLVG FGHNYGRMRT KEWKWDDIAK 120 RMANAGRPRD ADDCMKKWDN LFQNYKKIQR FQNASGQPDF FRLSNEERKE HNFKFRMERV 180 LYNEIHAGMV GNHTIFPPNV ADTGSPDGVQ VPRQGAGGGE SVGSEAGGEG FPEERSSARD 240 SDNNAGSGAG GGKRKNARQQ ALEWIADVMD LHGELMSSTV ESSSKRQCSI FTRQYDILEK 300 EVAVQKAHYA ASDETQRMMC HMPMEIAAAI REKCCMLATD KCRLLPADIF NVVEDRRRHH 360 SSHLVTWTIF AGVVVLLACT WTSVVNRWWS RSTVTVGLLF FSPPIFSPRS TLAGVVVLLS 420 TACTSSSSSR GGQYFCVVRV FVRVMPRQHG RHFSRQISGT SNGGRRNTSR SSDRTAKLAR 480 RSMPTRGSAR GKKRDGVPHD SQGQGRGRRH VPKVKRVRSD DASARVPPRG AQGWAAAVGG 540 DYDKDFTTEE EQGEASASAV RESGRQRSSD HSAPKRMLTP PPEAQQLCAR KRRREKAAIV 600 DLGCDDDDPL EKRRLRTRTT TTPPPAVVAC SAVDERPVTG RLPATPSQPR QPNPGDDGGS 660 VQHGGGGEVV ADARKVGGES AGAAGAGALG TVAPVATARE EAALVFKSGN CPRGYNVAFQ 720 YSLESVATDI ARAMWYGEEW YNVVSPTVCA HTIDLSMDLP LWFSGTNIEE RPDGDDMVAH 780 QDSTVIYVAH AFRAAVQMGA LIDGDFISYD PLCRVADCFR LLLEACMWIM RMAGDDPRSH 840 YEAFYFASLM AKPTLIAAMH RSFDHRRSVV HAANIVTEWL GKANATLGEY PDYIPQWAPC 900 GIGFRHNAST TGPEDAKKLD WLGSAPLDDD NNDDGKYDA

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence

MQAHSDGGDD DGGGGDNADE RLMEDVEAGD DNDDIHIRPL GKTGGRGRGR SRGAVRGRSI  60
GRGGRGGGDD DGGKSATYWS PEDQMLLVRC KRKQDMHLVG FGHNYGRMRT KEWKWDDIAK  120
RMANAGRPRD ADDCMKKWDN LFQNYKKIQR FQNASGQPDF FRLSNEERKE HNFKFRMERV  180
LYNEIHAGMV GNHTIFPPNV ADTGSPDGVQ VPRQGAGGGE SVGSEAGGEG FPEERSSARD  240
SDNNAGSGAG GGKRKNARQQ ALEWIADVMD LHGELMSSTV ESSSKRQCSI FTRQYDILEK  300
EVAVQKAHYA ASDETQRMMC HMPMEIAAAI REKCCMLATD KCRLLPADIF NVVEDRRRHH  360
SSHLVTWTIF AGVVVLLACT WTSVVNRWWS RSTVTVGLLF FSPPIFSPRS TLAGVVVLLS  420
TACTSSSSSR GGQYFCVVRV FVRVMPRQHG RHFSRQISGT SNGGRRNTSR SSDRTAKLAR  480
RSMPTRGSAR GKKRDGVPHD SQGQGRGRRH VPKVKRVRSD DASARVPPRG AQGWAAAVGG  540
DYDKDFTTEE EQGEASASAV RESGRQRSSD HSAPKRMLTP PPEAQQLCAR KRRREKAAIV  600
DLGCDDDDPL EKRRLRTRTT TTPPPAVVAC SAVDERPVTG RLPATPSQPR QPNPGDDGGS  660
VQHGGGGEVV ADARKVGGES AGAAGAGALG TVAPVATARE EAALVFKSGN CPRGYNVAFQ  720
YSLESVATDI ARAMWYGEEW YNVVSPTVCA HTIDLSMDLP LWFSGTNIEE RPDGDDMVAH  780
QDSTVIYVAH AFRAAVQMGA LIDGDFISYD PLCRVADCFR LLLEACMWIM RMAGDDPRSH  840
YEAFYFASLM AKPTLIAAMH RSFDHRRSVV HAANIVTEWL GKANATLGEY PDYIPQWAPC  900
GIGFRHNAST TGPEDAKKLD WLGSAPLDDD NNDDGKYDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	590	594	RKRRR
2	590	596	RKRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-07	Trihelix family protein