PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GBG82586.1

Organism

Chara braunii

Taxonomic ID

69332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara

Family

Trihelix

Protein Properties

Length: 769aa MW: 84213.4 Da PI: 9.0458

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GBG82586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.9	2.5e-13	429	505	2	71
trihelix 2 WtkqevlaLiearr.......emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W+ +e l+L++ +r ++++++ r k k ++W +++k+m++ g++r +qC ++wen+ + y+k+ ++ek+ GBG82586.1 429 WSLNESLVLVRCKRdqddyfaNVGTNFARMKTKDQKWMDIAKRMEKDGVRRDGEQCMKRWENIFGWYRKVWDREKDS 505 9***********55554444555555679***************************************99973 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MRSQSISMKQ ERPPPTTPCR SSSASRYIGL CFRALSSSKG GRSVCRVLLQ ECMADMVRKL 60 ALLIILLGAM VLFIALHACH VAGARIRRGR RKGLKRLRQG ASGSKGMGDE YSRGCEGFGM 120 GRGAYEGGSG MQHYLHHKFD PNLYSHLSPH QQPLPDDTTW TSPPSTLGLA WESTQTSYDT 180 PPRVESTGGG VGPMSALLGE TRGRGRHPFD LQPSPTTTMD VSRTVLVQRS GQGGGASTQT 240 MHASGLDDGM SMHRPNQISR PAPSQAAPAG SVPYHQTAAG ATMQDQRPDL GGVAESPRCV 300 ERIVCRFNSL RATSDGDGAG TTMQERRPDV GGVAESRRCV ERVVCRFNSL RPTSNGDVGG 360 RDGGASKTDR IDIEDDDGDD DDEDEAPVKE AASIGTKKQA SKGRGKAKGK DKEGDTNGEG 420 GGSGARGNWS LNESLVLVRC KRDQDDYFAN VGTNFARMKT KDQKWMDIAK RMEKDGVRRD 480 GEQCMKRWEN IFGWYRKVWD REKDSGLQSY FLMTTKARKE KGYKFNLDRT VYDAIHIMQG 540 NNQVIHPPNL VDIGNTKGQQ SQQREQSQAA AGGGEADTSA SENRGADAGD RCGSRSSSNG 600 IHGKRKNARQ LAFKAVTDVM KTHSAVVAES VNRASKRQCD VLQRQCDIME REARTQERQC 660 EVLDVGQRMF AALRGGRERR YNFHVIVALG YADDMLREVV GYATKVGRAI PNRWEGGVDV 720 LADIVDLLMS NIAIEHDDRM TVPADFRVHP DPPMHNPSGL RGEIHSINE

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MRSQSISMKQ ERPPPTTPCR SSSASRYIGL CFRALSSSKG GRSVCRVLLQ ECMADMVRKL  60
ALLIILLGAM VLFIALHACH VAGARIRRGR RKGLKRLRQG ASGSKGMGDE YSRGCEGFGM  120
GRGAYEGGSG MQHYLHHKFD PNLYSHLSPH QQPLPDDTTW TSPPSTLGLA WESTQTSYDT  180
PPRVESTGGG VGPMSALLGE TRGRGRHPFD LQPSPTTTMD VSRTVLVQRS GQGGGASTQT  240
MHASGLDDGM SMHRPNQISR PAPSQAAPAG SVPYHQTAAG ATMQDQRPDL GGVAESPRCV  300
ERIVCRFNSL RATSDGDGAG TTMQERRPDV GGVAESRRCV ERVVCRFNSL RPTSNGDVGG  360
RDGGASKTDR IDIEDDDGDD DDEDEAPVKE AASIGTKKQA SKGRGKAKGK DKEGDTNGEG  420
GGSGARGNWS LNESLVLVRC KRDQDDYFAN VGTNFARMKT KDQKWMDIAK RMEKDGVRRD  480
GEQCMKRWEN IFGWYRKVWD REKDSGLQSY FLMTTKARKE KGYKFNLDRT VYDAIHIMQG  540
NNQVIHPPNL VDIGNTKGQQ SQQREQSQAA AGGGEADTSA SENRGADAGD RCGSRSSSNG  600
IHGKRKNARQ LAFKAVTDVM KTHSAVVAES VNRASKRQCD VLQRQCDIME REARTQERQC  660
EVLDVGQRMF AALRGGRERR YNFHVIVALG YADDMLREVV GYATKVGRAI PNRWEGGVDV  720
LADIVDLLMS NIAIEHDDRM TVPADFRVHP DPPMHNPSGL RGEIHSINE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-10	Trihelix family protein