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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GBG82441.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Charophyceae; Charales; Characeae; Chara
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 1328aa MW: 144947 Da PI: 5.83 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 41.8 | 2.8e-13 | 559 | 630 | 2 | 66 |
trihelix 2 WtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66
W+ +++ aLi+a+r+ + +++ r k ++ +W++v+++++ g+ r++++C +kw+nl +++kk+ +
GBG82441.1 559 WSVEHIIALIRAKRDEDAHMQgmghtyaRMKPREWKWQDVAQRLKNVGVYRNAEKCGKKWDNLMQQFKKVHH 630
9*************6666666433333367899************************************976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 1328 aa Download sequence |
MLEVIWVLEE GPAPELDEFV DWRQVDALSS DCYTLLDERL EGGADWAKRS GGELPITMLA 60 MVAPAAPAPT ISPTPATMFS SQVTTNNNNN YTNNNNNVHD SGMEGVILSS CASGSDNNHN 120 NHNNHNNNNS NNNNNNSNNN YSNNNNNNNN NNNTDGVHCA PLLCWRPRCL PFAAVVVDCF 180 MADVFCRLPL LLLVVLLLLL VVLFRVCILG NVAPRQRKTR TSMKYARMEA RQAIPRSGGE 240 QVGGRRCGGT LSTIGRVSQR VGCDALPPHL QPLPGSSDEE EXVERRPQTV SLGSGSTXEX 300 SATELXGXGG XVYEQSFTEL LRPGLGEDEG DGRVNLSFGL STGRSTTPSR TVLVRPHPXD 360 EGGZLTAVDR SARTRALASE TAGANRNSST AQPRAASLSK GAQGRPEWMQ LPSPLSAASE 420 VARGRGVGVD GGTDFLDVGD GRDGREVWRD LRRDHRLPRE EYITHGVERL HVGDRKNENE 480 TDDPPAEADD DDDDDKDNDI ECGEGGGGHA SPSLQTDMAG KGGKSKPSGR NARSRVKKGQ 540 GKRSGGEGDG DAEEKRNFWS VEHIIALIRA KRDEDAHMQG MGHTYARMKP REWKWQDVAQ 600 RLKNVGVYRN AEKCGKKWDN LMQQFKKVHH FQSPSGGANF FQFTSKERAI RGFNFTMDRA 660 VYDEIEGSTG MNHTIHPRNV ADTGVSGGVR PPSTSYVDPD SVADGEGGAG REDDEEGSTR 720 GSSRTTGTPG GSGKRKNTRQ QTFEALTECM EKHGELMAST MESASKRQCS IQVRQCEALE 780 AEVEVQRKHY AASDEVSKLM FCELPTAIEG AFVGSAMSSY GGGRAKAALK QIVEGATPAK 840 KGRHQAKRQR KGVQAVAAGS ARDVVEEAVV EEEMTNDDDD FEDDDDEPLP RKARVGSAGG 900 IRINEGGEGT PTARRGGGVA AANQLVFVDV ARDDGARRRK EGRRWLWDVA TPAVAAHGGT 960 VAVPGEAVEV PKGGDGAAGG EDDEALVHRL RGQRVATHAM DAAAKLWEDD NRLWNDTQGS 1020 AVVRIIQEAR AYLVAVARGV QSPTIRRSIS LLHNSIPQHK IEDESELNVV KERALKVQTI 1080 SLKAIHGWVF KSESRQRGYH MAYQYALNHA TTDIARAMWS AEDWRSLVSP MLFRTTLNAD 1140 MKLPLWFMGV NIVDRHEDDE CAAYQEACVQ RLVRDFTSAV GMIEAMDGGR ESYERLKGMA 1200 EAMRYLLAAT MRIMRMARDD PRSHYDASVF VQLTAKTTLL ASMNRQFDAR QHITQSAQVM 1260 TDKLGRPPPT FAPPPVYIPD WASKCGVTFS HDATLASPME AKRLDWLGTG PPEDDDDDAE 1320 GDDKGEGG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 532 | 540 | ARSRVKKGQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G35640.1 | 4e-10 | Trihelix family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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